Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9836819_9837228_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9836819 - 9837228

Intron Length:

410

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTAGGCCCT

5'SS Class:

major

3'SS Sequence:

TCCTTCCCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCTGAG

U12 Branch Point Sequence:

CCAGCGTCCATC

Flanking Amino Acid:

AFKRKTLVLIGASGVGRSHI

Intron Amino Acid Position:

422

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.4

0.46

1.1

57.5

47.1

Major BPS

54.8

0.12

1.6

53.3

44.2

Major PPT

82.7

0.74

0.7

77.1

24.9

Minor 5ss

39.6

-1.2

3.4

57.9

46.3

Minor BPS

-1.1

2.3

38.2

Associated Gene:

Gene:

MPP1

Ensembl Gene ID:

ENSAPLG00000005377

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038772

9826296 - 9840912

14617

ENSAPLT00000005594

9825583 - 9840912

15330