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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9853808_9854877_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9853808 - 9854877
Intron Length:
1070

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCATTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
GCGTGTTTCATT
Flanking Amino Acid:
SRRSRGAPGKARALVMDSLS
Intron Amino Acid Position:
120

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
75.7
34.4
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
83.1
0.75
0.9
74.5
40
Minor 5ss
27.6
-2.6
3
34.8
41.6
Minor BPS
45.3
-0.2
2.1
59.33
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022850
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045161
9853451 - 9857185
3735