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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9859948_9860352_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9859948 - 9860352
Intron Length:
405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTGAGTATC
5'SS Class:
major
3'SS Sequence:
TTTTCTCCCTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTTTATTTATTT
Flanking Amino Acid:
CCPLRPVVPSPVINGYRNKS
Intron Amino Acid Position:
202

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
75.4
34.4
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.5
0.73
0.6
82.1
22.7
Minor 5ss
37
-1.5
2.9
51.4
39.2
Minor BPS
57.4
0.31
1.8
76.23
41.2

Associated Gene:

Gene:
TRMT2B
Ensembl Gene ID:
ENSAPLG00000013756
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014330
9857976 - 9866477
8502
ENSAPLT00000042468
9857976 - 9866624
8649