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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9861100_9861558_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9861100 - 9861558
Intron Length:
459

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAAAA
5'SS Class:
strong_major
3'SS Sequence:
CCCCTCCTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAC
U12 Branch Point Sequence:
CCTTACTGTACT
Flanking Amino Acid:
IPSKHKHVAQCYEEFIRRSP
Intron Amino Acid Position:
259

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
79.3
28.7
Major BPS
68.9
0.47
1
59.6
38.6
Major PPT
73.8
0.54
0.7
67.2
26.2
Minor 5ss
32.1
-2
3
39.7
45.8
Minor BPS
49.1
0.01
2
69.83
46.5

Associated Gene:

Gene:
TRMT2B
Ensembl Gene ID:
ENSAPLG00000013756
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014330
9857976 - 9866477
8502