Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9863483_9864017_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9863483 - 9864017

Intron Length:

535

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATATGTG

5'SS Class:

major

3'SS Sequence:

TTATATGTTCTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTATAT

U12 Branch Point Sequence:

TTTGTTTTATAT

Flanking Amino Acid:

CALTSLYFQESTMTRCSHEQ

Intron Amino Acid Position:

339

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.4

0.67

71.2

38.9

Major BPS

79.2

0.73

75.3

39.4

Major PPT

74.2

0.54

66.2

44.7

Minor 5ss

41.7

-0.9

3.2

57.3

47.4

Minor BPS

54.6

0.22

1.8

76.11

Associated Gene:

Gene:

TRMT2B

Ensembl Gene ID:

ENSAPLG00000013756

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000042468

9857976 - 9866624

8649

ENSAPLT00000014330

9857976 - 9866477

8502