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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9864233_9864361_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9864233 - 9864361
Intron Length:
129

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
CCTGGATTTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
GTATCCTGGATT
Flanking Amino Acid:
TVLLDVCCGTGTIGLSLARH
Intron Amino Acid Position:
411

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
72.2
39.5
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
72.1
0.5
1
61.4
43.7
Minor 5ss
34.3
-1.8
2.9
43
44.2
Minor BPS
64.7
0.54
1.5
77.62
38.6

Associated Gene:

Gene:
TRMT2B
Ensembl Gene ID:
ENSAPLG00000013756
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014330
9857976 - 9866477
8502
ENSAPLT00000042468
9857976 - 9866624
8649