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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9868025_9870116_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9868025 - 9870116
Intron Length:
2092

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGGACG
5'SS Class:
major
3'SS Sequence:
TGCTTGATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TACTGCTTGATT
Flanking Amino Acid:
RLSRDAYNEMKRAYKSYVRA
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
64.8
40.7
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
77.2
0.61
0.9
73.7
40.6
Minor 5ss
27.3
-2.6
2.9
29
36.9
Minor BPS
60.9
0.42
1.8
75.52
41.8

Associated Gene:

Gene:
TMEM35A
Ensembl Gene ID:
ENSAPLG00000013684
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014250
9867905 - 9870503
2599