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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9875015_9875952_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9875015 - 9875952
Intron Length:
938

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAAATGC
5'SS Class:
major
3'SS Sequence:
GTTTGTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CAATTTTAAAAT
Flanking Amino Acid:
LLTVALSGKLADTVNTRLLK
Intron Amino Acid Position:
110

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.8
0.54
1
61.9
37.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
85.4
0.8
0.9
76.9
42.1
Minor 5ss
37.8
-1.4
3.2
47.6
43.3
Minor BPS
48.5
-0
1.7
62.32
41.9

Associated Gene:

Gene:
CENPI
Ensembl Gene ID:
ENSAPLG00000013427
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019461
9874413 - 9890019
15607
ENSAPLT00000014005
9874284 - 9890019
15736