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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9876072_9876680_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9876072 - 9876680
Intron Length:
609

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTCCA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTGTCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTGAT
U12 Branch Point Sequence:
TATTACTTGATG
Flanking Amino Acid:
CVSKCTSNVQLLFLRWLITM
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1.1
71.6
40.2
Major BPS
75
0.62
1
65.3
41.5
Major PPT
79.5
0.66
0.9
73.2
37.2
Minor 5ss
40
-1.1
2.8
51.5
44.9
Minor BPS
64.5
0.31
1.6
68.5
39

Associated Gene:

Gene:
CENPI
Ensembl Gene ID:
ENSAPLG00000013427
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019461
9874413 - 9890019
15607
ENSAPLT00000014005
9874284 - 9890019
15736
ENSAPLT00000033353
9874284 - 9890019
15736