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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9879669_9880408_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9879669 - 9880408
Intron Length:
740

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
ACG|GCAAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TGTTATTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAT
U12 Branch Point Sequence:
TGTTATTTGACA
Flanking Amino Acid:
RRLLDLQAKTGMQPHLQALL
Intron Amino Acid Position:
218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1.2
71
40.7
Major BPS
79.4
0.73
1
80.1
32
Major PPT
76.3
0.59
1
72.4
42.2
Minor 5ss
30.6
-2.2
3.8
42.4
44.3
Minor BPS
67.2
0.54
1.5
76.17
34.4

Associated Gene:

Gene:
CENPI
Ensembl Gene ID:
ENSAPLG00000013427
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033353
9874284 - 9890019
15736
ENSAPLT00000019461
9874413 - 9890019
15607
ENSAPLT00000014005
9874284 - 9890019
15736