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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9881644_9881911_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9881644 - 9881911
Intron Length:
268

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAACAC
U12 Branch Point Sequence:
CACAGAATAACT
Flanking Amino Acid:
QLVENIHCLEFPSQMGSVLT
Intron Amino Acid Position:
341

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
75.7
34.4
Major BPS
53.3
0.08
1.1
61.3
34.4
Major PPT
96.3
1.04
0.5
92.6
17.2
Minor 5ss
27.6
-2.6
3
34.8
41.6
Minor BPS
41.1
-0.6
2.2
56.02
45.5

Associated Gene:

Gene:
CENPI
Ensembl Gene ID:
ENSAPLG00000013427
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033353
9874284 - 9890019
15736
ENSAPLT00000019461
9874413 - 9890019
15607
ENSAPLT00000014005
9874284 - 9890019
15736