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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9882033_9882237_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9882033 - 9882237
Intron Length:
205

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCTGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCAAAT
U12 Branch Point Sequence:
TTGTGTTCAAAT
Flanking Amino Acid:
YYWMGQTLQEECTWCVVENS
Intron Amino Acid Position:
381

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
87.2
27
Major BPS
77.3
0.68
1
81.5
27
Major PPT
73.9
0.54
0.9
72.9
32
Minor 5ss
36.1
-1.6
3
50.2
45.8
Minor BPS
49.7
0.05
2.1
73.16
43.8

Associated Gene:

Gene:
CENPI
Ensembl Gene ID:
ENSAPLG00000013427
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033353
9874284 - 9890019
15736
ENSAPLT00000019461
9874413 - 9890019
15607
ENSAPLT00000014005
9874284 - 9890019
15736