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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9884053_9885840_F

Intron Information:

Intron Rank:
15
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
9884053 - 9885840
Intron Length:
1788

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTC|GTATGTATT
5'SS Class:
weak_major
3'SS Sequence:
TTCATTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TATTCCTAGATT
Flanking Amino Acid:
LYFVLDFYEVVCDMYLKYNL
Intron Amino Acid Position:
551

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.2
0.41
1.3
76.2
39
Major BPS
80
0.75
1
78.6
31
Major PPT
85.8
0.81
0.8
80.7
31.2
Minor 5ss
49.3
-0
2.5
69.1
35.5
Minor BPS
68.4
0.66
1.7
83.82
37.4

Associated Gene:

Gene:
CENPI
Ensembl Gene ID:
ENSAPLG00000013427
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033353
9874284 - 9890019
15736
ENSAPLT00000019461
9874413 - 9890019
15607
ENSAPLT00000014005
9874284 - 9890019
15736