About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9887245_9887388_F


Intron Information:

Intron Rank:
17

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
9887245 - 9887388

Intron Length:
144

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AAG|GTAACTACT

5'SS Class:
strong_major

3'SS Sequence:
TCTTATCCCTCAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTCTTAT

U12 Branch Point Sequence:
ATTTTCTTATCC

Flanking Amino Acid:
AAKENELTKKKKQQFKFSSQ

Intron Amino Acid Position:
609

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
84.5
0.81
1.1
84.4
33.5

Major BPS
91.4
1.03
0.7
79.9
34.9

Major PPT
79.9
0.67
0.8
77.5
30.9

Minor 5ss
43.9
-0.7
2.6
61.4
42.9

Minor BPS
72.2
0.68
1.5
80.35
34.3

Associated Gene:

Gene:
CENPI

Ensembl Gene ID:

Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

9874284 - 9890019
15736

9874413 - 9890019
15607

9874284 - 9890019
15736