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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9887623_9889056_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9887623 - 9889056
Intron Length:
1434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGGTG
5'SS Class:
major
3'SS Sequence:
TCTTCTCATTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTGTTTTTATTT
Flanking Amino Acid:
MGYAIHFLQQACPDDPTFNF
Intron Amino Acid Position:
687

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
69.7
40.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
71.6
0.49
1
76.2
31.7
Minor 5ss
32.9
-2
3.6
46.5
48.8
Minor BPS
63.7
0.51
1.5
78.58
38.8

Associated Gene:

Gene:
CENPI
Ensembl Gene ID:
ENSAPLG00000013427
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019461
9874413 - 9890019
15607
ENSAPLT00000014005
9874284 - 9890019
15736
ENSAPLT00000033353
9874284 - 9890019
15736