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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9889099_9889887_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9889099 - 9889887
Intron Length:
789

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATTG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
TTTCTTTTTATA
Flanking Amino Acid:
DPTFNFSLIKGKKWNWYLDY
Intron Amino Acid Position:
701

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.8
0.99
0.8
81.6
33.2
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
91.1
0.92
0.6
87.8
22.4
Minor 5ss
41.6
-0.9
3.1
55.7
48.5
Minor BPS
58.7
0.27
1.5
71.67
34

Associated Gene:

Gene:
CENPI
Ensembl Gene ID:
ENSAPLG00000013427
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033353
9874284 - 9890019
15736
ENSAPLT00000019461
9874413 - 9890019
15607
ENSAPLT00000014005
9874284 - 9890019
15736