About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9911355_9911783_F


Intron Information:

Intron Rank:
3

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
9911355 - 9911783

Intron Length:
429

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
GCG|GTACGTTCC

5'SS Class:
major

3'SS Sequence:
CTCTCCTCTCCAG|G

3'SS Class:
strong_PPT

U2 Branch Point Sequence:
CTCTCCT

U12 Branch Point Sequence:
CTCTCCTCTCCA

Flanking Amino Acid:
LVQQEKETHAAFMEEVKSRG

Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
76.9
0.63
1.1
67.3
39.2

Major BPS
32.7
-1
4.2
69
38.9

Major PPT
81.4
0.71
0.7
72.9
31.9

Minor 5ss
40.9
-1
3
54.1
43.1

Minor BPS
38.2
-0.9
3.6
59.23
46.4

Associated Gene:

Gene:
DRP2

Ensembl Gene ID:

Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

9908984 - 9918177
9194

9908984 - 9918747
9764

9907354 - 9918920
11567

9910417 - 9918381
7965