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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9912687_9912935_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9912687 - 9912935
Intron Length:
249

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGAAG
5'SS Class:
major
3'SS Sequence:
TCCCCTCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGAAAT
U12 Branch Point Sequence:
AATGCTGCCACT
Flanking Amino Acid:
HINTRWKQLQASINERLKQL
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
65.6
41.7
Major BPS
52
0.05
1.3
59
44.6
Major PPT
78.7
0.65
0.7
72.7
25.4
Minor 5ss
24.8
-2.9
3.1
29.2
43.7
Minor BPS
39.3
-0.7
2.4
59.18
44.4

Associated Gene:

Gene:
DRP2
Ensembl Gene ID:
ENSAPLG00000012832
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013429
9907354 - 9918920
11567
ENSAPLT00000031278
9910417 - 9918381
7965
ENSAPLT00000026186
9908984 - 9918177
9194
ENSAPLT00000020046
9908984 - 9918747
9764