About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9913406_9913511_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9913406 - 9913511
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TCCCTCCTCCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCCAG
U12 Branch Point Sequence:
CCAGCCTGACGC
Flanking Amino Acid:
ISPNKVPYYINHQAQTTCWD
Intron Amino Acid Position:
359

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
75
35.2
Major BPS
49.3
-0
1.7
66.4
42.2
Major PPT
76.8
0.6
0.7
68.5
31.8
Minor 5ss
32.6
-2
3.3
40.4
40
Minor BPS
40.6
-0.7
2
43.12
44.4

Associated Gene:

Gene:
DRP2
Ensembl Gene ID:
ENSAPLG00000012832
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020046
9908984 - 9918747
9764
ENSAPLT00000013429
9907354 - 9918920
11567
ENSAPLT00000031278
9910417 - 9918381
7965
ENSAPLT00000026186
9908984 - 9918177
9194