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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9914459_9914584_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9914459 - 9914584
Intron Length:
126

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGGCC
5'SS Class:
major
3'SS Sequence:
TCTCGCCTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
TGTGCTGTATCT
Flanking Amino Acid:
SLNWLLNVFDSGRSGKMRAL
Intron Amino Acid Position:
472

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.2
60.6
40.1
Major BPS
62
0.3
1
62.3
30.4
Major PPT
79.8
0.67
0.8
73
31.8
Minor 5ss
35
-1.7
3.7
51
45.8
Minor BPS
47.5
-0.1
2.3
71.96
45.3

Associated Gene:

Gene:
DRP2
Ensembl Gene ID:
ENSAPLG00000012832
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013429
9907354 - 9918920
11567
ENSAPLT00000031278
9910417 - 9918381
7965
ENSAPLT00000026186
9908984 - 9918177
9194
ENSAPLT00000020046
9908984 - 9918747
9764