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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9915677_9915819_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9915677 - 9915819
Intron Length:
143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGGAT
5'SS Class:
strong_major
3'SS Sequence:
CCGCTCTCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCCAAC
U12 Branch Point Sequence:
TCTCCCTTCTCC
Flanking Amino Acid:
VCRQCPIKGFRYRSLKQFNV
Intron Amino Acid Position:
609

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1
73
38.2
Major BPS
48.7
-0
1.3
56.4
38.8
Major PPT
70.7
0.47
0.8
64.7
30.8
Minor 5ss
29.5
-2.3
3.8
45.4
49.7
Minor BPS
43.1
-0.5
3.6
67.52
44.1

Associated Gene:

Gene:
DRP2
Ensembl Gene ID:
ENSAPLG00000012832
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031278
9910417 - 9918381
7965
ENSAPLT00000026186
9908984 - 9918177
9194
ENSAPLT00000020046
9908984 - 9918747
9764
ENSAPLT00000013429
9907354 - 9918920
11567