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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9915932_9916296_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9915932 - 9916296
Intron Length:
365

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTACGGGGC
5'SS Class:
major
3'SS Sequence:
TCTCTCTCCGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCCCAC
U12 Branch Point Sequence:
CTGCCCACCACC
Flanking Amino Acid:
HYPIMEYYTPTTSSENMRDF
Intron Amino Acid Position:
647

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69
0.45
1.1
56.6
42.5
Major BPS
48.9
-0
1.3
58.1
40.4
Major PPT
81.4
0.71
0.7
76.7
25.3
Minor 5ss
29
-2.4
3.7
40.8
45.9
Minor BPS
42.3
-0.6
2.1
52.99
44.2

Associated Gene:

Gene:
DRP2
Ensembl Gene ID:
ENSAPLG00000012832
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020046
9908984 - 9918747
9764
ENSAPLT00000013429
9907354 - 9918920
11567
ENSAPLT00000031278
9910417 - 9918381
7965
ENSAPLT00000026186
9908984 - 9918177
9194