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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9916702_9916888_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9916702 - 9916888
Intron Length:
187

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCGGCA
5'SS Class:
major
3'SS Sequence:
CTATTTCCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTCAA
U12 Branch Point Sequence:
TGTGTCTCAAGC
Flanking Amino Acid:
THSRIEHFASRLAEMENQNC
Intron Amino Acid Position:
714

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.8
0.37
1.3
57.6
41.8
Major BPS
68
0.45
1.2
71.6
36.4
Major PPT
82
0.72
0.8
73.8
36.6
Minor 5ss
33.7
-1.9
3.7
47.4
48.2
Minor BPS
49.1
-0
1.9
62.67
42.9

Associated Gene:

Gene:
DRP2
Ensembl Gene ID:
ENSAPLG00000012832
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013429
9907354 - 9918920
11567
ENSAPLT00000031278
9910417 - 9918381
7965
ENSAPLT00000026186
9908984 - 9918177
9194
ENSAPLT00000020046
9908984 - 9918747
9764