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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9918128_9918727_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9918128 - 9918727
Intron Length:
600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTCGAG
5'SS Class:
major
3'SS Sequence:
GTCTCTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
TTCTGCTGACCT
Flanking Amino Acid:
KLRSAFPSSRGMTSLI*
Intron Amino Acid Position:
927

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1.1
56.2
43
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
81.8
0.72
0.8
73
37.3
Minor 5ss
34.7
-1.7
3.5
46.5
48.8
Minor BPS
50.7
0.1
2.2
76.42
46.1

Associated Gene:

Gene:
DRP2
Ensembl Gene ID:
ENSAPLG00000012832
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020046
9908984 - 9918747
9764