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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9923474_9923592_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9923474 - 9923592
Intron Length:
119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATC|GTGAGTGAG
5'SS Class:
major
3'SS Sequence:
TCTCCCCTTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCACAC
U12 Branch Point Sequence:
TGTGGCTAAGCA
Flanking Amino Acid:
EVAEFWCDAIHTGMYALVSK
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.9
0.38
1.3
61.1
39.6
Major BPS
50
0
1.2
60.7
37.6
Major PPT
83
0.74
0.7
76.9
25
Minor 5ss
28.1
-2.5
3.1
31.6
36.9
Minor BPS
44.1
-0.4
2.3
59.6
46.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030086
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023601
9921101 - 9925547
4447