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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9925548_9926089_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9925548 - 9926089
Intron Length:
542

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TCCCTCTTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACCTTAC
U12 Branch Point Sequence:
TGTGCCTTACTG
Flanking Amino Acid:
KQQEEREKQQMTSLQEQLES
Intron Amino Acid Position:
340

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.7
83.1
30.9
Major BPS
60.1
0.25
1
51.3
35.1
Major PPT
79.5
0.66
0.7
71.9
32.6
Minor 5ss
29.6
-2.3
2.6
32.5
42.4
Minor BPS
57.8
0.11
1.8
63.65
44.7

Associated Gene:

Gene:
TAF7
Ensembl Gene ID:
ENSAPLG00000012103
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012633
9925197 - 9930180
4984