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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9926150_9926419_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9926150 - 9926419
Intron Length:
270

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTAAT
U12 Branch Point Sequence:
GTACTGGTAATT
Flanking Amino Acid:
IMKVENLALKTRLQAVLDEF
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.8
77.7
30.1
Major BPS
69.2
0.48
1.3
69.7
44.2
Major PPT
86.7
0.82
0.7
81.5
30.6
Minor 5ss
27.6
-2.6
3.3
39.2
46.2
Minor BPS
42.5
-0.4
2.5
62.31
42

Associated Gene:

Gene:
TAF7
Ensembl Gene ID:
ENSAPLG00000012103
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012633
9925197 - 9930180
4984