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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9926807_9927163_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9926807 - 9927163
Intron Length:
357

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTACGGTGG
5'SS Class:
major
3'SS Sequence:
TTGCACCCTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCACAT
U12 Branch Point Sequence:
TTCCTTTGCACC
Flanking Amino Acid:
SGHKQGHGSSEHDELREIFN
Intron Amino Acid Position:
219

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.4
0.43
1.2
52.4
46.9
Major BPS
68.9
0.47
1
75
30
Major PPT
74.8
0.56
0.9
70.6
35.9
Minor 5ss
34.6
-1.7
3.4
37.8
47
Minor BPS
46.6
-0.2
1.8
59.67
39.8

Associated Gene:

Gene:
TAF7
Ensembl Gene ID:
ENSAPLG00000012103
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012633
9925197 - 9930180
4984