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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9927281_9927667_R

Intron Information:

Intron Rank:
6
Intron Class:
minor
Intron Phase:
1
Intron Coordinates:
9927281 - 9927667
Intron Length:
387

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
TTCCTACTGTCAG|G
3'SS Class:
strong_BPS
U2 Branch Point Sequence:
GACTCAT
U12 Branch Point Sequence:
TTTCCCTTGACT
Flanking Amino Acid:
LSTDAEAVSVRWEVIAEDET
Intron Amino Acid Position:
180

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
48
-0.1
1.4
53.6
45.9
Major BPS
69.4
0.48
1.2
71.6
36.4
Major PPT
74.2
0.55
1
73.6
35.9
Minor 5ss
96.3
1.56
0.7
94.6
16.8
Minor BPS
86.6
1.24
0.9
97.38
26.1

Associated Gene:

Gene:
TAF7
Ensembl Gene ID:
ENSAPLG00000012103
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012633
9925197 - 9930180
4984