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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9927741_9928765_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9927741 - 9928765
Intron Length:
1025

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
CTCTCCGTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
TTCTCTTTCCCC
Flanking Amino Acid:
RRFRKTAKKKYIESPDVEKE
Intron Amino Acid Position:
156

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.7
83.9
30.3
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
73.1
0.52
0.9
64.5
36.5
Minor 5ss
36.5
-1.5
2.9
49.7
46.6
Minor BPS
43.6
-0.5
3.6
69.26
43

Associated Gene:

Gene:
TAF7
Ensembl Gene ID:
ENSAPLG00000012103
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012633
9925197 - 9930180
4984