About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9928825_9929048_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9928825 - 9929048
Intron Length:
224

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTGAGTAGA
5'SS Class:
major
3'SS Sequence:
TCCTCTGTCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGCAAT
U12 Branch Point Sequence:
TCTGCCTGACAC
Flanking Amino Acid:
REKKFIWNHGITLPLKNVRK
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1
68.2
38.6
Major BPS
53
0.07
1.4
62.5
41.7
Major PPT
76.4
0.6
0.8
70.9
33.3
Minor 5ss
31.8
-2.1
2.7
38.9
40.3
Minor BPS
47.5
-0.2
1.9
60.18
44.8

Associated Gene:

Gene:
TAF7
Ensembl Gene ID:
ENSAPLG00000012103
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012633
9925197 - 9930180
4984