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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9929683_9929806_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9929683 - 9929806
Intron Length:
124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCGTG
5'SS Class:
major
3'SS Sequence:
TCTCTTCCCGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
CAGCACTGACCT
Flanking Amino Acid:
LKDRLTIELHADGRHGIVRV
Intron Amino Acid Position:
49

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.6
0.6
1
63.5
42.9
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
81.5
0.71
0.7
76.9
25.1
Minor 5ss
35
-1.7
3.5
47.2
48.2
Minor BPS
43.8
-0.3
1.9
56.65
45

Associated Gene:

Gene:
TAF7
Ensembl Gene ID:
ENSAPLG00000012103
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012633
9925197 - 9930180
4984