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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9929886_9930114_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9929886 - 9930114
Intron Length:
229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGGGGGCT
5'SS Class:
major
3'SS Sequence:
CCCCCCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTGAG
U12 Branch Point Sequence:
CTGTTGTGAGCG
Flanking Amino Acid:
ESQFVLRLPPEYASTVRRAV
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.8
0.4
1.1
58
38.5
Major BPS
57.3
0.18
1.7
57.1
49.4
Major PPT
69.6
0.44
0.8
60.5
29.4
Minor 5ss
25.5
-2.8
3.7
38.5
46.7
Minor BPS
41.1
-0.8
2.3
47.19
46.1

Associated Gene:

Gene:
TAF7
Ensembl Gene ID:
ENSAPLG00000012103
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012633
9925197 - 9930180
4984