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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9930439_9930905_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9930439 - 9930905
Intron Length:
467

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGGCG
5'SS Class:
major
3'SS Sequence:
CTTTCTCCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCCCAT
U12 Branch Point Sequence:
TTCACCTGAATT
Flanking Amino Acid:
RLGRRGQARAGQGGHAYLRE
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.5
0.34
1.3
53.2
43
Major BPS
72.3
0.55
1.2
80.7
33.2
Major PPT
81.2
0.7
0.7
73.4
31.5
Minor 5ss
34
-1.8
3.7
47.7
48
Minor BPS
68.5
0.66
1.5
81.72
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028144
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036243
9930291 - 9934160
3870