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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9930963_9931655_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9930963 - 9931655
Intron Length:
693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
GTTTCTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAT
U12 Branch Point Sequence:
TGATGCTTACCT
Flanking Amino Acid:
EWLWWAGLLCMGVGEAANFA
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.8
35.3
Major BPS
84
0.85
0.9
75
39.9
Major PPT
86.7
0.83
0.8
81.1
30.9
Minor 5ss
38.2
-1.3
2.7
49.5
40.3
Minor BPS
57.7
0.32
2.1
77.58
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028144
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036243
9930291 - 9934160
3870