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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9931747_9931877_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9931747 - 9931877
Intron Length:
131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TATTATTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTTTTTTATT
Flanking Amino Acid:
TPLGALSVLVSAVLSSTFLN
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
85.7
0.8
0.8
77.4
41.1
Minor 5ss
39.7
-1.2
2.9
52.1
44.7
Minor BPS
63.9
0.52
1.5
80
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028144
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036243
9930291 - 9934160
3870