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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9932039_9932528_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9932039 - 9932528
Intron Length:
490

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACTTAAA
5'SS Class:
major
3'SS Sequence:
TCTTTCTCCAAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
GAGCCCTTAATT
Flanking Amino Acid:
ESMAEKLKDPGFIVFAVCVL
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
76.2
34.5
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
73.3
0.52
1
74.7
27.9
Minor 5ss
34
-1.8
2.9
42.5
44.3
Minor BPS
70.6
0.73
1.3
75.79
40.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028144
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036243
9930291 - 9934160
3870