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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9948133_9948186_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
9948133 - 9948186
Intron Length:
54

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CCA|GCCCGTCTC
5'SS Class:
weak_major
3'SS Sequence:
GGACATCGAGAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TGGACAT
U12 Branch Point Sequence:
TGGACATCGAGA
Flanking Amino Acid:
GVTLGGCSNPITCVETVVPE
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
51.5
0.04
1.4
59.8
41.7
Major BPS
52.4
0.06
1.3
60.7
45.9
Major PPT
45.7
-0.2
1.1
38.6
38.6
Minor 5ss
25
-2.9
4
41.3
38.9
Minor BPS
41
-0.7
2
49.5
41.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023799
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047747
9948004 - 9952604
4601