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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9952181_9953744_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9952181 - 9953744
Intron Length:
1564

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCAGTGCG
5'SS Class:
major
3'SS Sequence:
CTTCTCCTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTCTCACTGATA
Flanking Amino Acid:
GQTKPIFRKKAKTTKKIVLR
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1.3
69.7
41.3
Major BPS
85
0.87
0.8
85.6
23
Major PPT
81
0.7
0.7
73
31.9
Minor 5ss
28.4
-2.5
2.9
33.2
41.8
Minor BPS
50.1
-0
1.9
68.28
38.1

Associated Gene:

Gene:
RPL36AL
Ensembl Gene ID:
ENSAPLG00000011151
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011598
9951828 - 9953998
2171