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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9953868_9953977_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9953868 - 9953977
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TTCCTTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TGGGAGTAAACT
Flanking Amino Acid:
FELGGDKKRKGQVIQF*
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
69.9
43.4
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
91.4
0.93
0.6
87.5
22.7
Minor 5ss
38.5
-1.3
3
49.7
46.5
Minor BPS
41.9
-0.5
2.4
61.11
48.2

Associated Gene:

Gene:
RPL36AL
Ensembl Gene ID:
ENSAPLG00000011151
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011598
9951828 - 9953998
2171