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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9958826_9958926_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
9958826 - 9958926
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTGAGTGAG
5'SS Class:
major
3'SS Sequence:
CTCCCGAGCCCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ACCCCAA
U12 Branch Point Sequence:
TGCTCCCGAGCC
Flanking Amino Acid:
PGGIQRLADYVHARGLKLGI
Intron Amino Acid Position:
113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.3
68.4
38.7
Major BPS
46.7
-0.2
1.2
52.4
34
Major PPT
59
0.2
1
49.7
38
Minor 5ss
28
-2.5
3
30.3
36.2
Minor BPS
46.9
-0.2
2
61.2
43.5

Associated Gene:

Gene:
GLA
Ensembl Gene ID:
ENSAPLG00000011126
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036464
9954696 - 9959340
4645
ENSAPLT00000011581
9954696 - 9959652
4957