About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9963339_9965269_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9963339 - 9965269
Intron Length:
1931

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCACC
5'SS Class:
major
3'SS Sequence:
TTTCCCCCGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAC
U12 Branch Point Sequence:
GCCTGGCTGACG
Flanking Amino Acid:
LRRRQRRQRMEEELVRESRF
Intron Amino Acid Position:
500

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
67.6
37.6
Major BPS
49.4
-0
1.3
42.8
41.8
Major PPT
73.2
0.52
0.9
66.5
35.6
Minor 5ss
35.3
-1.7
2.8
41.4
39.1
Minor BPS
36.4
-1.2
2.5
39.47
44.4

Associated Gene:

Gene:
GLRA4
Ensembl Gene ID:
ENSAPLG00000010996
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018855
9963051 - 9969990
6940