About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9964833_9965269_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
9964833 - 9965269
Intron Length:
437

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGCACC
5'SS Class:
major
3'SS Sequence:
TGCGCACCAAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
CTGTCCTTATTT
Flanking Amino Acid:
LRRRQRRQRMGLSSGTASLE
Intron Amino Acid Position:
369

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
67.6
37.6
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
49
-0
1.1
46.3
34.7
Minor 5ss
35.3
-1.7
2.8
41.4
39.1
Minor BPS
67.8
0.64
1.6
79.35
43.5

Associated Gene:

Gene:
GLRA4
Ensembl Gene ID:
ENSAPLG00000010996
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011445
9963051 - 9970346
7296