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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9966741_9966929_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9966741 - 9966929
Intron Length:
189

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGGGGC
5'SS Class:
major
3'SS Sequence:
GCCTCTGCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAC
U12 Branch Point Sequence:
CCCTGCTGACGC
Flanking Amino Acid:
SFGSVTETTMDYRVNVFLRQ
Intron Amino Acid Position:
98

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
60.2
38.7
Major BPS
66.3
0.4
1.1
57
41.8
Major PPT
66.3
0.37
0.9
57
38.7
Minor 5ss
24.3
-3
3.3
28.8
38.7
Minor BPS
38
-0.9
2.2
41.78
45.3

Associated Gene:

Gene:
GLRA4
Ensembl Gene ID:
ENSAPLG00000010996
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011445
9963051 - 9970346
7296