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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9979208_9980007_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9979208 - 9980007
Intron Length:
800

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATCTTA
5'SS Class:
major
3'SS Sequence:
CTGCCCCTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGGTGAC
U12 Branch Point Sequence:
TTGTCCTGCCCC
Flanking Amino Acid:
LGKWLGHPDKFVGITYVLTI
Intron Amino Acid Position:
134

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1
73
34.2
Major BPS
47.5
-0.1
1.3
38.2
41.7
Major PPT
76.1
0.59
0.8
69.2
31.3
Minor 5ss
42.1
-0.9
3
55.8
48.3
Minor BPS
41
-0.7
3.6
66.89
44.7

Associated Gene:

Gene:
PLP1
Ensembl Gene ID:
ENSAPLG00000010958
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011414
9978304 - 9981113
2810