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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9980416_9980558_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9980416 - 9980558
Intron Length:
143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
TGTTCCCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTCAC
U12 Branch Point Sequence:
GGGAGCTCACCG
Flanking Amino Acid:
NLLSICKTSEFQMTFHLFIA
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
61
0.28
1.1
63.1
35.8
Major PPT
83.8
0.76
0.8
77.6
31.1
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
38.3
-1
2.1
37.89
44.2

Associated Gene:

Gene:
PLP1
Ensembl Gene ID:
ENSAPLG00000010958
Chromosome:
10

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011414
9978304 - 9981113
2810