Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_10_9998355_9998869_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9998355 - 9998869

Intron Length:

515

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTGAGTGCG

5'SS Class:

major

3'SS Sequence:

TCTTCTCTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GATTAAT

U12 Branch Point Sequence:

ACCAGATTAATG

Flanking Amino Acid:

EEKNTLPSKETIEQEKECVK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

69.9

0.47

1.1

59.5

39.8

Major BPS

0.6

1.2

75.9

36.3

Major PPT

90.3

0.91

0.6

88.5

21.1

Minor 5ss

28.8

-2.4

29.1

36.7

Minor BPS

43.2

-0.6

43.14

42.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017528

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020143

9996713 - 9998907

2195