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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10000829_10004341_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10000829 - 10004341
Intron Length:
3513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TCTATTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTTTTTTTATTT
Flanking Amino Acid:
CDILVDDNTVMRLITDSKVK
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
83.8
34.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
81.1
0.7
0.8
76
32.5
Minor 5ss
41.8
-0.9
2.8
56.1
41.3
Minor BPS
64.6
0.54
1.5
79.7
37

Associated Gene:

Gene:
ARIH1
Ensembl Gene ID:
ENSAPLG00000016156
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016876
9985341 - 10038861
53521