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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10004861_10009421_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10004861 - 10009421
Intron Length:
4561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCGTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATAAAAT
U12 Branch Point Sequence:
AATGCCCCAATG
Flanking Amino Acid:
QICYLNYPNSYFTGLECGHK
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
80.9
33.1
Major BPS
61.8
0.29
1.1
67.7
34.6
Major PPT
82.8
0.74
0.9
77.1
37.1
Minor 5ss
33.4
-1.9
2.8
44.7
42.7
Minor BPS
45.8
-0.4
2
52.22
42.3

Associated Gene:

Gene:
ARIH1
Ensembl Gene ID:
ENSAPLG00000016156
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016876
9985341 - 10038861
53521