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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_10009567_10017320_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10009567 - 10017320
Intron Length:
7754

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCAGC
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTACAT
U12 Branch Point Sequence:
TCTTGTGTCATG
Flanking Amino Acid:
FNWDKEKLMERYFDGNLEKL
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.2
39.9
Major BPS
65
0.37
1.3
75
40
Major PPT
75.8
0.58
1
70.3
40.4
Minor 5ss
39.7
-1.2
2.9
52.1
44.7
Minor BPS
39.5
-0.9
2.6
49.65
45.6

Associated Gene:

Gene:
ARIH1
Ensembl Gene ID:
ENSAPLG00000016156
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016876
9985341 - 10038861
53521